Publications by Trainees

Found 39 results

2012
Dreaden Kasson, TM, Rexroth S, Barry BA.  2012.  Light-Induced Oxidative Stress, N-Formylkynurenine, and Oxygenic Photosynthesis. PLoS ONE. 7(7):e42220.
Athavale, SS, Petrov AS, Hsiao C, Watkins D, Prickett CD, Gossett JJ, Lie L, Bowman JC, O'Neill E, Bernier CR et al..  2012.  RNA Folding and Catalysis Mediated by Iron (II). PLoS ONE. 7(5):e38024.
Athavale, SS, Gossett JJ, Hsiao C, Bowman JC, O'Neill E, Hershkovitz E, Preeprem T, Hud NV, Wartell RM, Harvey SC et al..  2012.  Domain III of the T. thermophilus 23S rRNA folds independently to a near-native state.. RNA (New York, N.Y.). 18(4):752-8. Abstract
Zeng, Y, Larson SB, Heitsch CE, McPherson A, Harvey SC.  2012.  A model for the structure of satellite tobacco mosaic virus. Journal of Structural Biology. 180(1):110-116.
Petrov, AS, Bernier CR, Hsiao C, Okafor DC, Tannenbaum E, Stern J, Gaucher E, Schneider D, Hud NV, Harvey SC et al..  2012.  RNA–Magnesium–Protein Interactions in Large Ribosomal Subunit. The Journal of Physical Chemistry B. 116(28):8113-8120.
Engelhart, AE, Cafferty BJ, Okafor DC, Chen MC, Williams LD, Lynn DG, Hud NV.  2012.  Nonenzymatic Ligation of DNA with a Reversible Step and a Final Linkage that Can Be Used in PCR. ChemBioChem. 13(8):1121-1124.
Maehigashi, T, Hsiao C, Kruger Woods K, Moulaei T, Hud NV, Dean Williams L.  2012.  B-DNA structure is intrinsically polymorphic: even at the level of base pair positions. Nucleic Acids Research. 40(8):3714-3722.
Polander, BC, Barry BA.  2012.  A hydrogen-bonding network plays a catalytic role in photosynthetic oxygen evolution. Proceedings of the National Academy of Sciences. 109(16):6112-6117.
Barry, BA, Chen J, Keough J, Jenson D, Offenbacher A, Pagba C.  2012.  Proton-Coupled Electron Transfer and Redox-Active Tyrosines: Structure and Function of the Tyrosyl Radicals in Ribonucleotide Reductase and Photosystem II. The Journal of Physical Chemistry Letters. 3(4):543-554.
Donegan, RK, Hill SE, Turnage KC, Orwig SD, Lieberman RL.  2012.  The Glaucoma-Associated Olfactomedin Domain of Myocilin is a Novel Calcium-Binding Protein. Journal of Biological Chemistry.
2011
Offenbacher, AR, Chen J, Barry BA.  2011.  Perturbations of aromatic amino acids are associated with iron cluster assembly in ribonucleotide reductase.. Journal of the American Chemical Society. 133(18):6978-88. Abstract
Pai, JC, Culver JA, Drury JE, Motani RS, Lieberman RL, Maynard JA.  2011.  Conversion of scFv peptide-binding specificity for crystal chaperone development.. Protein engineering, design & selection : PEDS. 24(5):419-28. Abstract
Brown, MB, Haack KKV, Pollack BP, Millard-Stafford M, McCarty NA.  2011.  Low abundance of sweat duct Cl- channel CFTR in both healthy and cystic fibrosis athletes with exceptionally salty sweat during exercise.. American journal of physiology. Regulatory, integrative and comparative physiology. 300(3):R605-15. Abstract
Updegrove, TB, Correia JJ, Chen Y, Terry C, Wartell RM.  2011.  The stoichiometry of the Escherichia coli Hfq protein bound to RNA.. RNA (New York, N.Y.). 17(3):489-500. Abstract
Dreaden, TM, Chen J, Rexroth S, Barry BA.  2011.  N-formylkynurenine as a marker of high light stress in photosynthesis.. The Journal of biological chemistry. 286(25):22632-41. Abstract
Barry, BA.  2011.  Proton coupled electron transfer and redox active tyrosines in Photosystem II.. Journal of photochemistry and photobiology. B, Biology. 104(1-2):60-71. Abstract
Keough, JM, Jenson DL, Zuniga AN, Barry BA.  2011.  Proton coupled electron transfer and redox-active tyrosine z in the photosynthetic oxygen-evolving complex.. Journal of the American Chemical Society. 133(29):11084-7. Abstract
Komeda, S, Moulaei T, Chikuma M, Odani A, Kipping R, Farrell NP, Williams LD.  2011.  The phosphate clamp: a small and independent motif for nucleic acid backbone recognition.. Nucleic acids research. 39(1):325-36. Abstract
Choi, S, Yu J, Patel SA, Tzeng Y-L, Dickson RM.  2011.  Tailoring silver nanodots for intracellular staining.. Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology. 10(1):109-15. Abstract
Kodali, VK, Scrimgeour J, Kim S, Hankinson JH, Carroll KM, de Heer WA, Berger C, Curtis JE.  2011.  Nonperturbative chemical modification of graphene for protein micropatterning.. Langmuir : the ACS journal of surfaces and colloids. 27(3):863-5. Abstract
Tucker, AK, Hernandez R.  2011.  Absence of enhanced diffusion in the dynamics of a thick needle through three-dimensional fixed spherical scatterers.. The journal of physical chemistry. B. 115(15):4412-8. Abstract
Orwig, SD, Lieberman RL.  2011.  Biophysical characterization of the olfactomedin domain of myocilin, an extracellular matrix protein implicated in inherited forms of glaucoma.. PloS one. 6(1):e16347. Abstract
2010
Kampfer, AJ, Balog EM.  2010.  S-adenosyl-L-methionine regulation of the cardiac ryanodine receptor involves multiple mechanisms.. Biochemistry. 49(35):7600-14. Abstract
Tucker, AK, Hernandez R.  2010.  Observation of a trapping transition in the diffusion of a thick needle through fixed point scatterers.. The journal of physical chemistry. A. 114(36):9628-34. Abstract
Humphries, WH, Fay NC, Payne CK.  2010.  Intracellular degradation of low-density lipoprotein probed with two-color fluorescence microscopy.. Integrative biology : quantitative biosciences from nano to macro. 2(10):536-44. Abstract